RnoEX0092844 @ rn6
Exon Skipping
Gene
ENSRNOG00000004307 | Tor3a
Description
torsin family 3, member A [Source:RGD Symbol;Acc:1310101]
Coordinates
chr13:74270657-74276964:-
Coord C1 exon
chr13:74276709-74276964
Coord A exon
chr13:74276162-74276275
Coord C2 exon
chr13:74270657-74270922
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCATAGCATTTCCTTTCCAGGCT
3' ss Score
6.26
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTCATGTTTTTTGGCGCTTTCTGGTTGTTGCTGCTGCTGCTGCTGCCGCCGCTGCGCCCCCCGGGAGCGCAGGGCCACCGCGGTGCCAAGAGCCCGGAGCAGGAGGCCGACGAGCCCATCCCTTGGCCAAGCATCCAACGCCTGCGGGAGCAGCTGAGGACGGCCGGGACCCTCTCCAAACGGTACTGGGCGCTCTTCAGCTGCACCTTGTGGCCGGATCACTGTGAAGATCAGGAGACCCCCGTGCCGCCTCTGG
Seq A exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATATGCTCACTTCATGGTTCTGCCGCTTTCAGGACTGCTGCAGCGCGGGAAACTGCAGGATCTCCAACAACTTCACAG
Seq C2 exon
GCTTAGAATCAGACCTTCGTGTGCGACTGCATGGCCAGCATCTCGCTAGCAAGCTGGTCCTAGAAGCAGTGAAGGGTTACTTAGAGATGCCCCAAGTTGGCAAGGCTCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCACGGATGCTGGTGGACAACCTGTATCGGGACGGAATGAGGAGTGACTGTGTCAAGATGTTTATCTCTACCTTCCATTTCCCACACCCCAAGTATGTGGACTTATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004307-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063096=Torsin=PU(14.7=48.7)
C2:
PF063096=Torsin=FE(68.2=100),PF085656=CDC37_M=PU(58.2=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTCTCCAAACGGTACT
R:
GAAGTTCTTGCCTGTGCCAGA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]