GgaEX1059926 @ galGal3
Exon Skipping
Gene
ENSGALG00000004216 | TOR3A
Description
NA
Coordinates
chr8:6550300-6551984:-
Coord C1 exon
chr8:6551621-6551984
Coord A exon
chr8:6551207-6551320
Coord C2 exon
chr8:6550300-6550565
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCCGACCTTTCCAGGCT
3' ss Score
8.36
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACGGCTCCGGCGCTCCGAAGGGAGGACGGGAGCCCGCGGGCACCCAGCCCGGCTGGGCAGAGGGTCCGCGCGGCCATGGGTCGGGGCACGCCGCTGTCTTGCCTGGGGCCGGCCTGCTGCCTGCTGCTGCTGCTGGGGGACTGCGGGGCACTGGGGAGCCGTGGGAAGCAGCGGGGGCCGCTGGAGGAGCGCCAGAGCGCCGTAACGGAGGCGGCACCGTGGGGCAGAGCGAGGTATGAGGCGGTGAAGAAGCAGCTGGGAGCCGTGGGAGCTCTCTCCAAGCAGTACTGGCAGTACCTGGCTTGCAAGGTGTGGCAGGAGGGCTGCGAGAAGGAGGAAGAGGAAAAGACCAGCCGCGGCCCAG
Seq A exon
GCTGGAGCTTGCCTCTGGTGGGCCAGGATTACCTGGAGATCCTCTCTGCCTGGTACTGCAATTTTGGCAAGTGCTGCAAGACAGGAGACTGCCGGATCATCAACAACATCACAG
Seq C2 exon
GGCTAGAACTGGACCTCCATGAGCAGCTCCACGGGCAGCACTTGGCCAAAGAAGTTGTCATCCAGGCCGTGCGAGGGTTCCTGCAGAGCCCACAGCCACAGAAGGCTCTGGTCCTCTCCTTCCACGGCTGGTCTGGCACAGGCAAGAACTTTGTGGCCCGCATGGTGGCTGCTCACCTGTACCGGGACGGGCTGAAGAGTGAATGCGTCAGGGTGTTCATCGCGCTCTTCCACTTTCCCCACCACAAGTATGTGGACTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004216-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063096=Torsin=PU(14.7=48.7)
C2:
PF063096=Torsin=FE(68.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGAAGGAGGAAGAGGA
R:
CATTCACTCTTCAGCCCGTCC
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]