DreEX0080651 @ danRer10
Exon Skipping
Gene
ENSDARG00000079308 | tor3a
Description
torsin family 3, member A [Source:ZFIN;Acc:ZDB-GENE-081104-165]
Coordinates
chr8:16569825-16573292:-
Coord C1 exon
chr8:16573020-16573292
Coord A exon
chr8:16572559-16572681
Coord C2 exon
chr8:16569825-16570090
Length
123 bp
Sequences
Splice sites
3' ss Seq
AACACACATTCTGCTCTCAGTGC
3' ss Score
7.2
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCGGCCTGTCATCGGTGAGACTCGGATGTGTCTGAATGGACGCTGCAGTTAAATCCTATAGCTCAATGTTACATTTTTTACTAGCTATATATTTCTGTCGGCACCGATGTTTTCCTTGGTAATCGTGTCATCACTCCTGGCTGTTTCGGCTAATGCGGATTTTTTCCAATTCGAAAGCATCTCCAATGTTTCTACCTATTATTTCAATTACCTCTATTGCAATATTTGGGAAGGAGACTGTCAACCACATCAGGATGACGCGACTCAACAAG
Seq A exon
TGCCTACTGGGGACATTTGGTCAGGGTTTCCCCAGTACTATACTGGCATACTGACAGCCTGGTACTGCAGCGTGGGTCAGTGCTGCGATTCAGGAGACTGCAGGATCACAAATAACATCACAG
Seq C2 exon
GTTTGGAGCGAGATCTCCAGCTGAAGCTCCACGGGCAGCATCTGGCCCAGTCTGTGGTTCTGAAAGCGATTCAAGGCTTCATCAAAAACCCTGAGTCCAACAAACCTCTGACTCTGTCCTTTCACGGCTGGTCTGGGACAGGCAAGAACTTTGTGGCCCGGATAGTAGCGGACAACCTGTACCGGGACGGTATAAAGAGCGAATGTGTGCGTTTGTTCATTGCCCCATTCCACTTCCCTCACGCGAGGTTGGTGGACGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079308-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063096=Torsin=PU(14.7=45.2)
C2:
PF063096=Torsin=FE(68.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGACGCGACTCAACAA
R:
GGCAATGAACAAACGCACACA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]