MmuEX6028481 @ mm10
Exon Skipping
Gene
ENSMUSG00000060519 | Tor3a
Description
torsin family 3, member A [Source:MGI Symbol;Acc:MGI:1353652]
Coordinates
chr1:156669371-156674325:-
Coord C1 exon
chr1:156674086-156674325
Coord A exon
chr1:156673530-156673646
Coord C2 exon
chr1:156669371-156669636
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCATAGCATTTCCTTTCCAGGCT
3' ss Score
6.26
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
CGGAAGCGCTCGCTCCGGTCATGTTTCTTGGCGCTCTCTGGTTGCTGCTGCTCCTGCCGCTGCGCCCCCCGGGAGCGCAGGGCCAGGAGGCCGACGAGCCCACCCCTTGGCCGAGCGTCAAAGGCCTGAAGGAGCAGCTGAGGAAGGCCGGTGCCCTCTCCAAACGGTACTGGGAGCTTTTCAGCTGCACCTTGTGGCCCGATCACTGTGAAGACCAGGAGACCCCCGTGCCGCCTCTGG
Seq A exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATGTGCTCACTGCATGGCTCTGTCGCTTTCAGGACTGCTGCAGCGGCGGCGGCGATTGCAGGATCTCCAACAACTTGACAG
Seq C2 exon
GCTTAGAATCAGACTTGCGTGTACGACTGCACGGCCAGCATCTCGCTAGCAAGCTGGTCCTAAGAGCAGTGAAGGGCTACTTAGAGATGCCCCAAGTAGGCAAGGCCCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCTTGGCACGGATACTGATGGACAACCTGTATCGGGACGGCATGAGGAGTGACTGTGTCAAGATGTTTATTTCTACCTTCCACTTTCCACACCCCAAGTATGTGGACACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060519-'0-4,'0-0,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
PF063096=Torsin=PU(15.4=50.0)
C2:
PF063096=Torsin=FE(67.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAGACCAGGAGACCC
R:
GACACAGTCACTCCTCATGCC
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types