BtaEX6070014 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61908391-61915975:-
Coord C1 exon
chr16:61915805-61915975
Coord A exon
chr16:61911835-61912130
Coord C2 exon
chr16:61908391-61908663
Length
296 bp
Sequences
Splice sites
3' ss Seq
TGTAATGATCTCCTGGCCAGGTG
3' ss Score
7.28
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGCCTTGCATCGCCCCTACGGTTGTGATGTTGAACCCCAGGCCCTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTTGGAGCCACCGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
Seq A exon
GTGAAAAGCTCCGAGTCCTTGGTTACAACCAGAATGGAGAGTGGAGCGAAGTTCGCTCTAAGAATGGCCAAGGCTGGGTGCCAAGCAACTACATCACCCCTGTGAACAGCCTGGAAAAACATTCCTGGTATCATGGACCTGTGTCTCGCAGTGCAGCAGAGTACCTACTCAGCAGTCTGATCAATGGCAGCTTCCTGGTGCGAGAGAGTGAGAGCAGCCCCGGGCAGCTGTCAATCTCGCTCAGGTACGAGGGGCGTGTGTATCACTACAGGATCAATACCACCACAGATGGCAAG
Seq C2 exon
GTATACGTAACTGCTGAGAGCCGCTTCAGCACCTTGGCTGAGCTTGTTCACCATCACTCCACGGTGGCTGATGGGCTGGTGACAACCCTACACTATCCAGCACCCAAGTGTAATAAGCCTACAGTCTACGGTGTGTCCCCCATCCACGACAAGTGGGAAATGGAACGAACAGATATTACCATGAAGCACAAACTTGGGGGTGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTACAGTTGCTGTGAAAACATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026-'7-7,'7-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
C2:
PF0001719=SH2=PD(23.7=19.8),PF0771412=Pkinase_Tyr=PU(12.7=35.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGTGATGTTGAACCCCA
R:
GGGGACACACCGTAGACTGTA
Band lengths:
292-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]