MmuEX0003293 @ mm9
Exon Skipping
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:158552616-158560256:+
Coord C1 exon
chr1:158552616-158552786
Coord A exon
chr1:158555419-158555714
Coord C2 exon
chr1:158559984-158560256
Length
296 bp
Sequences
Splice sites
3' ss Seq
TGTGATGACTTGATGGCTAGGTG
3' ss Score
4.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGTTTTGCACCGCCCGTTTGGCTGTGATGCTGAATCTCAGGCACTGAATGAAGCGATCAGGTGGAGCTCCAAGGAGAACTTGCTGGGAGCCACTGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGACTTTGTGGCAAGTGGTGATAACACACTCAGTATCACTAAAG
Seq A exon
GTGAAAAGCTGCGAGTCCTTGGTTATAACCAGAATGGCGAGTGGAGTGAAGTTCGCTCCAAGAATGGACAGGGTTGGGTGCCAAGCAACTACATCACTCCAGTTAATAGCCTGGAGAAACATTCCTGGTACCACGGACCTGTATCCCGCAGCGCAGCAGAGTATCTCCTCAGCAGCCTAATCAATGGCAGCTTCCTGGTTCGAGAGAGTGAGAGCAGCCCTGGGCAGCTGTCCATCTCTCTCAGGTATGAGGGACGTGTGTATCACTACAGGATCAATACCACCACAGACAGCAAG
Seq C2 exon
GTGTACGTGACAGCTGAGAGCCGCTTTAGCACCTTGGCAGAGCTTGTTCACCACCACTCCACAGTTGCTGATGGGCTAGTGACCACGCTGCACTACCCAGCACCGAAGTGCAACAAGCCAACCGTCTATGGCGTGTCTCCTATCCATGACAAGTGGGAAATGGAACGGACAGATATCACCATGAAGCACAAACTTGGGGGCGGTCAGTACGGAGAGGTTTACGTTGGCGTCTGGAAGAAGTACAGCCTTACAGTGGCTGTGAAAACACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
C2:
PF0001719=SH2=PD(23.7=19.8),PF0771412=Pkinase_Tyr=PU(12.7=35.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTTGGCTGTGATGCTGAA
R:
GAGACACGCCATAGACGGTTG
Band lengths:
296-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: