GgaEX6043802 @ galGal3
Exon Skipping
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6532323-6534033:+
Coord C1 exon
chr8:6532323-6532493
Coord A exon
chr8:6533225-6533520
Coord C2 exon
chr8:6533761-6534033
Length
296 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCCTGGGTCGTAGGTG
3' ss Score
8.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGGCCCTGCACCGCCCCTATGGTTGCGATGTCGAACCCCAGGCACTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTGGGAGCCACCGAGAGCGATCCCAACCTCTTTGTTGCACTTTATGATTTTGTAGCAAGCGGTGACAACACGCTCAGTATCACCAAAG
Seq A exon
GTGAGAAGTTGCGAGTCCTGGGTTACAACCAGAATGGTGAATGGAGTGAGGTACGTTCGAAGAATGGGCAGGGCTGGGTACCAAGCAACTACATCACACCAGTCAACAGCCTGGAGAAGCACTCGTGGTATCACGGGCCGGTGTCACGCAGCGCAGCAGAGTATCTGTTGAGCAGCCTCATCAATGGCAGCTTCCTGGTTCGTGAGAGTGAGAGCAGCCCAGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTTTACCACTACAGGATCAACACCACCTCAGATGGAAAG
Seq C2 exon
GTGTACGTGACAGCAGAAAGCCGTTTCAGCACGCTAGCAGAACTGGTGCACCATCACTCCACAGTAGCAGATGGACTGGTGACGACTCTGCATTACCCAGCACCCAAGTGCAATAAGCCCACTGTGTATGGAGTGTCCCCCATCCACGACAAGTGGGAGATGGAGCGGACTGACATCACCATGAAGCACAAACTCGGGGGAGGGCAGTATGGCGAGGTGTATGTTGGTGTCTGGAAGAAATACAACCTCACCGTTGCTGTGAAAACATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
C2:
PF0001719=SH2=PD(23.7=19.8),PF0771412=Pkinase_Tyr=PU(12.7=35.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTTGCGATGTCGAACCC
R:
GGATGGGGGACACTCCATACA
Band lengths:
299-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]