BtaEX6070017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61903904-61906284:-
Coord C1 exon
chr16:61906107-61906284
Coord A exon
chr16:61905357-61905541
Coord C2 exon
chr16:61903904-61904056
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCGGGGTTTCTTTCCCACAGGGA
3' ss Score
10.14
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGTGTGTACCTTGGAGCCACCATTTTACATTGTGACTGAATACATGCCTTATGGGAACTTGCTTGATTATCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTACTGCTTTACATGGCCACTCAGATCTCGTCTGCAATGGAGTATTTAGAGAAGAAGAATTTCATCCACAG
Seq A exon
GGATCTTGCAGCTCGTAACTGCCTGGTGGGAGAAAACCATGTGGTGAAAGTGGCTGATTTTGGCTTAAGTAGACTGATGACCGGAGACACCTATACTGCTCATGCTGGAGCCAAATTTCCTATTAAATGGACAGCACCAGAGAGTCTTGCCTACAATACTTTCTCAATTAAATCTGACGTCTGGG
Seq C2 exon
CTTTTGGGGTGCTCTTATGGGAAATTGCTACATATGGAATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGATCTACTGGAAAAAGGATACCGAATGGAGCAGCCTGAAGGATGTCCCCCTAAGGTGTATGAACTTATGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(23.4=100)
A:
PF0771412=Pkinase_Tyr=FE(24.6=100)
C2:
PF0771412=Pkinase_Tyr=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGAGAATGCAACCGAGA
R:
ACACCTTAGGGGGACATCCTT
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]