RnoEX6044884 @ rn6
Exon Skipping
Gene
ENSRNOG00000004305 | Abl2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:RGD Symbol;Acc:1590898]
Coordinates
chr13:74232204-74234213:+
Coord C1 exon
chr13:74232204-74232381
Coord A exon
chr13:74232845-74233029
Coord C2 exon
chr13:74234061-74234213
Length
185 bp
Sequences
Splice sites
3' ss Seq
CAGGCTTCTCTTTCCCATAGAGA
3' ss Score
8.89
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGTGTGCACCCTGGAGCCGCCATTCTACATTGTGACTGAATACATGCCGTACGGGAATCTGCTCGATTACCTCCGGGAGTGCAGCCGTGAGGAGGTGACTGCAGTGGTGCTGCTTTACATGGCCACTCAGATCTCCTCTGCCATGGAGTACTTGGAGAAGAAGAACTTCATCCACAG
Seq A exon
AGATCTTGCTGCACGGAACTGCCTGGTGGGGGAGAACCATGTGGTGAAAGTGGCTGACTTTGGTCTAAGTAGACTGATGACTGGAGACACCTACACCGCTCATGCTGGAGCCAAATTTCCTATTAAATGGACAGCGCCTGAGAGTCTGGCCTACAATACCTTTTCAATTAAATCTGACGTTTGGG
Seq C2 exon
CTTTTGGAGTACTGTTGTGGGAAATTGCTACGTATGGAATGTCACCATATCCAGGTATTGACCTATCTCAAGTCTATGACCTACTGGAAAAAGGATATCGAATGGAGCAGCCTGAGGGATGCCCCCCTAAAGTGTATGAACTTATGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004305-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(23.4=100)
A:
PF0771412=Pkinase_Tyr=FE(24.6=100)
C2:
PF0771412=Pkinase_Tyr=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCGATTACCTCCGGG
R:
CATCCCTCAGGCTGCTCCATT
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]