MmuEX6028476 @ mm9
Exon Skipping
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:158563211-158565348:+
Coord C1 exon
chr1:158563211-158563388
Coord A exon
chr1:158563884-158564068
Coord C2 exon
chr1:158565196-158565348
Length
185 bp
Sequences
Splice sites
3' ss Seq
CAGGGTTCTCTTTCCCATAGAGA
3' ss Score
8.27
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGTGTGTACCCTGGAGCCACCGTTTTACATTGTGACTGAATACATGCCGTATGGGAACCTGCTTGACTATCTCCGGGAGTGCAGCCGAGAGGAGGTGACCGCCGTCGTGTTACTTTACATGGCCACCCAGATCTCCTCTGCCATGGAGTACTTGGAGAAGAAGAACTTCATCCATAG
Seq A exon
AGATCTTGCTGCCCGGAACTGCCTAGTGGGCGAGAACCATGTGGTGAAAGTGGCCGACTTTGGTTTAAGTAGACTGATGACTGGAGATACCTACACTGCTCATGCTGGAGCCAAATTTCCTATTAAATGGACAGCACCCGAGAGTCTGGCCTACAATACCTTTTCAATTAAATCTGACGTTTGGG
Seq C2 exon
CGTTTGGAGTACTGTTGTGGGAAATTGCTACATATGGAATGTCACCATATCCAGGTATTGACCTATCTCAAGTCTATGACCTACTGGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAAGTGTATGAACTTATGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(23.4=100)
A:
PF0771412=Pkinase_Tyr=FE(24.6=100)
C2:
PF0771412=Pkinase_Tyr=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTTGACTATCTCCGGG
R:
CATCCCTCAGGCTGTTCCATT
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: