DreEX6048923 @ danRer10
Exon Skipping
Gene
ENSDARG00000013841 | abl2
Description
c-abl oncogene 2, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-020809-2]
Coordinates
chr8:14935046-14935996:+
Coord C1 exon
chr8:14935046-14935223
Coord A exon
chr8:14935544-14935728
Coord C2 exon
chr8:14935844-14935996
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCATCTCATTCTCAGGGA
3' ss Score
8.37
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
GTGTGTGTACTTTGGAGCCTCCCTTCTACATTGTGACCGAGTACATGCCCCATGGGAACCTGCTGGATTACCTGCGTGAGTGTGAAAGGGACCAGGTGAATGCTGTGGTGCTGCTCTACATGGCCACTCAGATCTCCTCCGCCATGGAGTATCTGGAGAAGAAGAACTTCATCCATAG
Seq A exon
GGACCTGGCAGCTCGTAATTGTCTAGTAGGAGAGAATCACGTGGTGAAGGTGGCTGATTTCGGACTGAGCCGTCTGATGACGGGTGACACCTACACAGCTCATGCGGGAGCCAAATTCCCCATCAAATGGACCGCACCAGAGAGTCTGGCCTACAACACCTTCTCCATCAAATCAGATGTGTGGG
Seq C2 exon
CATTTGGAGTTTTGCTTTGGGAGATTGCGACGTACGGCATGTCTCCATATCCAGGAATTGACCTGTCTCAGGTATATGATCTGCTGGAGAAGGGCTACCGCATGGAGCAGCCCGAAGGCTGTCCTCCTAAAGTCTACGAGCTCATGAGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013841-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(23.4=100)
A:
PF0771412=Pkinase_Tyr=FE(24.6=100)
C2:
PF0771412=Pkinase_Tyr=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGACCGAGTACATGCCC
R:
AGCCCTTCTCCAGCAGATCAT
Band lengths:
245-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]