GgaEX6043799 @ galGal3
Exon Skipping
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6536161-6537040:+
Coord C1 exon
chr8:6536161-6536338
Coord A exon
chr8:6536431-6536615
Coord C2 exon
chr8:6536888-6537040
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTACCTTCTTTTTCATGCAGGGA
3' ss Score
9.01
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGTGTGTACCCTGGAGCCCCCCTTTTACATCGTGACAGAGTACATGCCATATGGGAACTTGCTAGACTATTTACGGGAATGCAACCGGGAAGAAGTGAGCGCTGTCGTGCTGCTCTATATGGCCACTCAGATATCCTCTGCTATGGAGTACCTGGAGAAGAAGAACTTCATTCACAG
Seq A exon
GGACCTGGCAGCACGCAACTGCTTAGTTGGAGAAAACCACGTGGTGAAGGTGGCTGACTTCGGCTTAAGTAGGCTGATGACTGGAGATACCTACACAGCTCATGCTGGAGCCAAGTTCCCAATCAAGTGGACTGCTCCCGAGAGCCTGGCCTATAACACCTTTTCCATCAAATCGGATGTGTGGG
Seq C2 exon
CCTTTGGGGTGCTCTTATGGGAAATTGCGACCTACGGGATGTCACCATACCCAGGCATTGACCTCTCTCAGGTGTATGATCTGCTGGAAAAGGGCTATCGGATGGAACAACCGGAGGGATGCCCTCCAAAGGTTTATGAACTGATGAGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(23.4=100)
A:
PF0771412=Pkinase_Tyr=FE(24.6=100)
C2:
PF0771412=Pkinase_Tyr=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTGACAGAGTACATGCC
R:
CCGATAGCCCTTTTCCAGCAG
Band lengths:
252-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]