BtaEX6070263 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65750849-65754539:+
Coord C1 exon
chr16:65750849-65751031
Coord A exon
chr16:65751891-65752136
Coord C2 exon
chr16:65754394-65754539
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTTGACTTGGTTCCTTCCAGGTG
3' ss Score
9.48
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAGATTGTTACTCAGGGGATGAGAACCCTGACATTGAGTGTGAGGACTGCCCCATCGGTTTCTACAACGACCCGCATGACCCAGGCAGCTGCAAGCCCTGTCCCTGTCGCAATGGGTTCAGCTGCTCCGTGATGCCCGAGACAGAGGAGGTGGTGTGCAATAACTGTCCCCACGGCATCACTG
Seq A exon
GTGCCCGCTGCGAGCTCTGTGCCGACGGCTACTTTGGGGACCCCTTTGGGGAACATGGTCCAGTGAGGCCTTGTCAACCTTGTCAGTGCAGCGACAATGTGGACCCCAGTGCCCCCGGGAACTGCGACCGCCTGACAGGCAGGTGTCTGAAGTGCCTTCACAACACGACCGGTGCCCACTGCGACCAGTGCAAAGCCGGCTACTATGGGGACCCCTTGGCTCCCAACCCAGCGGACAAGTGTCGAG
Seq C2 exon
CTTGCAACTGCAACCCAATGGGCTCGGAGCCCGTGGAGTGTAGAAGTGATGGCAGCTGTGTTTGCAAGCCAGGATTTGACGGCCTCAACTGTGACCATGCAGCATTAACCAACTGTCCAGCTTGCTATAATCAAGTGAAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793-'15-13,'15-12,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(52.8=45.2)
A:
PF0005319=Laminin_EGF=PD(45.3=28.9),PF0005319=Laminin_EGF=WD(100=65.1)
C2:
PF0005319=Laminin_EGF=PU(95.9=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGAGAACCCTGACATTG
R:
AGCAAGCTGGACAGTTGGTTA
Band lengths:
295-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]