MmuEX6028258 @ mm10
Exon Skipping
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:153139726-153143908:-
Coord C1 exon
chr1:153143726-153143908
Coord A exon
chr1:153141526-153141771
Coord C2 exon
chr1:153139726-153139871
Length
246 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTCTTCCTTCCCAGGTG
3' ss Score
12.23
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
Exon sequences
Seq C1 exon
GAGATTGCTACTCGGGGGACGAGAATCCTGACATTGAGTGTGCTGACTGTCCCATCGGTTTCTACAATGACCCACATGACCCCCGCAGCTGCAAGCCATGTCCCTGTCACAATGGGTTCAGCTGTTCAGTGATGCCTGAGACAGAGGAGGTGGTGTGTAACAACTGTCCCCCTGGGGTCACAG
Seq A exon
GTGCCCGCTGTGAGCTCTGTGCTGATGGCTTCTTTGGGGATCCCTTTGGGGAACGTGGCCCAGTGAGGCCTTGTCAACGCTGCCAATGCAACAACAACGTGGACCCCAATGCCTCTGGGAACTGTGACCAGTTGACAGGCAGATGCTTGAAATGTATCTACAACACGGCCGGTGTCTACTGTGACCAGTGCAAAGCAGGTTACTTTGGAGACCCATTGGCTCCCAACCCAGCAGACAAGTGTCGAG
Seq C2 exon
CTTGCAACTGCAGCCCCATGGGCTCGGAGCCTGGAGAGTGTCGAGGTGATGGCAGCTGTGTTTGCAAGCCAGGCTTTGGCGGCCTCAACTGTGATCACGCAGCCCTAACCAGTTGTCCTGCTTGCTACAATCAAGTGAAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(52.8=45.2)
A:
PF0005319=Laminin_EGF=PD(45.3=28.9),PF0005319=Laminin_EGF=WD(100=65.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGCTACTCGGGGGACG
R:
GTTAGGGCTGCGTGATCACAG
Band lengths:
292-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types