DreEX6027969 @ danRer10

Exon Skipping

Gene

ENSDARG00000068288 | lamc2

Description

laminin, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-110222-3]

Coordinates

chr2:36021836-36025346:+

Coord C1 exon

chr2:36021836-36022062

Coord A exon

chr2:36024884-36025117

Coord C2 exon

chr2:36025210-36025346

Length

234 bp

Sequences

Splice sites

3' ss Seq

TAATCTTGCATTTTCCTCAGGTT

3' ss Score

8.61

5' ss Seq

AGGGTACAG

5' ss Score

3.14

Exon sequences

Seq C1 exon

AAGAAAAGTTTATGTCTGAGCTGAGGAATGTGGATTTATTGTGTTTGCAGGAGGCTGTTACTCAGCTGATGAGATCCCGAATCTGCAGATGTGCCCTAGGGGTTATTACGTGAACCGCCAACTGTCCAACTCCTGCCAGAAGTGTCCCTGTCGCGAGGGTGATTCTTGCTATGTGATTGGAGGAACACAGGAGGTGACGTGCACCCGCTGTCCTCGTGGGACTACAG

Seq A exon

GTTCCCGTTGTGAAATCTGTGATGATGGTTTTTATGGAGACCCTCTGGGAGAATACGGCCCTCGCAAACAGTGCCAGCCCTGCCAGTGTTATGGCCACGTGGACCAGAACGCTGTGGGCAACTGTGACCGGCGAACAGGGCAGTGCCGGAAGTGCCTGAACCACAGCACTGGCCCCAACTGTGAATACTGTGAAGCTGGATACCACCACAACTACCCCACAGAGCCATGCCAGG

Seq C2 exon

CTTGTAACTGCAACCGACAGGGTTCTGTGTCCAATTCATGCAGTGATAAAGGCCAGTGCGAGTGTAAGGAAGGATATGATGGACTTAGGTGTGAAGAATCAACATGTCCATCCTGCTTTAATCCAGTTAAGAGCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000068288-'10-11,'10-9,11-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0005319=Laminin_EGF=PU(60.3=80.9)

A:

PF0005319=Laminin_EGF=PD(38.1=30.4),PF0005319=Laminin_EGF=WD(100=64.6)

C2:

PF059116=DUF869=FE(23.4=100),PF0005319=Laminin_EGF=WD(100=97.8),PF131661=AAA_13=PU(23.9=84.8),PF059296=Phage_GPO=PU(9.1=26.1),PF041117=APG6=PU(8.8=26.1)

Main Inclusion Isoform:

ENSDARP00000089477