GgaEX6043944 @ galGal3
Exon Skipping
Gene
ENSGALG00000004627 | LAMC2
Description
NA
Coordinates
chr8:7849934-7851469:+
Coord C1 exon
chr8:7849934-7850113
Coord A exon
chr8:7850641-7850874
Coord C2 exon
chr8:7851333-7851469
Length
234 bp
Sequences
Splice sites
3' ss Seq
AGCGCCTCTCCCTTCCACAGGGC
3' ss Score
10.88
5' ss Seq
GGGGTACGA
5' ss Score
5.37
Exon sequences
Seq C1 exon
GCGAATGCTACTCGGGAGATGAAAACGTGGGGAACAGCATCAGCTGTCCATTCGGCTCCTACAGAGACCCCCGGCCCCCGCACAGCTGCAGGGCATGTCCCTGTGGCCACGGCCAGAGCTGCTCAGTGCTGCCAGGCCAGGAAGAGGTTGTCTGTGACCATTGCCCTCCTGGAGCTGCAG
Seq A exon
GGCCCCGCTGTGAGTTCTGTGCCGACGGCTATTTTGGAGATCCTGCAGCCTCCCAGCCATGCCGGCCGTGCCAGTGCAACAGCAACGTGGAGCCCAACGCCGTGGGGAACTGCGATCGCCGGACAGGAGAGTGCCTCAAGTGCATCTACAACACGGCTGGCTTCCACTGCGAGCGCTGCAAGGATGGCTTCTTTGGGAACCCCCTGGCCCCCAACCCTGCTGACAAGTGCCGGG
Seq C2 exon
CCTGCAACTGCAACTCGGTGGGAGCTGAGCCCCTGATGTGCCGGAATGATGGGAGCTGCATCTGCAAGCCTGGCTTTGGGGGACCCAACTGCGAGCAGAGTGAGTGCCCAGCCTGCTACAGCCAAGTGAAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004627-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(60.4=52.5)
A:
PF0005319=Laminin_EGF=PD(37.7=25.3),PF0005319=Laminin_EGF=WD(100=68.4)
C2:
PF0005319=Laminin_EGF=PU(93.6=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGAGATGAAAACGTGGG
R:
GGCTTTCACTTGGCTGTAGCA
Band lengths:
304-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]