RnoEX6044731 @ rn6
Exon Skipping
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70584574-70588389:-
Coord C1 exon
chr13:70588207-70588389
Coord A exon
chr13:70586425-70586670
Coord C2 exon
chr13:70584574-70584722
Length
246 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTTTTCCTTCCAAGGTG
3' ss Score
9.83
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGGATTGCTACTCAGGGGACGAGAATCCTGACATTGAGTGTGCCGACTGCCCCATTGGTTTCTATAACGACCCGCACGACCCCCGCAGCTGCAAGCCGTGTCCCTGCCACAATGGCTTCAGCTGTTCCGTGATGCCTGAGACAGAGGAGGTGGTGTGCAACAACTGCCCCCCTGGGGTCACAG
Seq A exon
GTGCCCGCTGTGAGCTCTGTGCAGATGGCTTCTTTGGGGACCCCTTTGGGGAACGTGGCCCAGTGAGGCCTTGTCAGCGGTGCCAATGCAACAACAATGTGGACCCCAGTGCTTCTGGGAACTGTGACCAGTTGACAGGCAGATGTTTGAAATGCATCTACAACACAGCGGGAATCTACTGTGACCAGTGCAAAGCAGGTTACTTCGGAGACCCATTGGCTCCCAACCCAGCAGACAAGTGTCGAG
Seq C2 exon
CTTGCAACTGCAACCCTGTGGGCTCGGAGCCTGGAGAGTGTCGAAGTGATGGCAGCTGTGTTTGCAAGCCAGGCTTTGGAGGCCTCAACTGTGCGCACGCCGCCGCCCTAACCAGTTGCCCTGCTTGCTACAATCAAGTGAAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667-'19-13,'19-12,20-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(52.8=45.2)
A:
PF0005319=Laminin_EGF=PD(45.3=28.9),PF0005319=Laminin_EGF=WD(100=65.1)
C2:
PF0005319=Laminin_EGF=WD(100=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGGGACGAGAATCCTG
R:
ATTGTAGCAAGCAGGGCAACT
Band lengths:
308-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]