BtaEX6070402 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68690924-68697942:+
Coord C1 exon
chr16:68690924-68691161
Coord A exon
chr16:68696744-68696806
Coord C2 exon
chr16:68697823-68697942
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTCTCTATGGTAGGAG
3' ss Score
7.13
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATTACACCGAGGACTACGTTCAGACAGGCCCTGGGCAGCTGTATGCCTACTCAACCCGGCTGTTCACCATTGACGGCGTCAGCGTGCCTTATACATGGACCCACACCGTCCTCTACGACGAGGCACAGGGAAGAATGCCTTTCTTGGTAGAAACACTTCATGCATCCTCTGTGGAATCTGACTACAACCAGTTAGAAGAGACACTGGGTTTTAAAATCCACGCTTCAATTTCCAAAG
Seq A exon
GAGAACGCAGTAATCAGTGTCCCCCTGGGTTTGCCTTAGACTCGGTTGGACCCTTTTGTGCTG
Seq C2 exon
ATGAAAATGAATGTGCCGCAGGGAATCCCTGCTCTCATTCCTGTCACAATGCCATGGGAACCTATTATTGCTCCTGCCCTAAAGGCCTCACCATAGCTGCCGATGGAAGAACTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'103-110,'103-109,104-110=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PD(26.1=61.2)
A:
PF146701=FXa_inhibition=PU(4.9=9.1)
C2:
PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGGCACAGGGAAGAATG
R:
ATTCCCTGCGGCACATTCATT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]