RnoEX6044659 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67926818-67932949:-
Coord C1 exon
chr13:67932712-67932949
Coord A exon
chr13:67928795-67928857
Coord C2 exon
chr13:67926818-67926937
Length
63 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCTCTCTTCGGTAGGAG
3' ss Score
7.3
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATTACACAGAGGACTACATTCAAACAGGACCTGGGCAGCTCTACGCCTACTCAACCCGGCTGTTCACCATCGATGGCATCAGTGTCCCCTATACATGGAACCACACCATTTTCTATGATCAGGCCTGGGGGAAAATGCCTTTCTTAGTAGAAACACTTCATGCATCTTCTGTAGAATCTGACTACAACCAACTAGAGGAGACACTGGGTTTCAAAATCCACGCTTCAATCTCCAAAG
Seq A exon
GAGATCGCAGTAACCAGTGCCCCTCTGGTTTTATCTTAGACTCAGCTGGACCCTTCTGTGCTG
Seq C2 exon
ATGAGGATGAATGCACAGCTGGGAACCCCTGCTCTCATACCTGCCACAATGCCATAGGAGCCTATTATTGCTCCTGTCCCAAAGGCCTCACCATAGCTGCCGATGGGAGAACCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'116-116,'116-115,117-116=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PD(26.1=61.2)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGGCCTGGGGGAAAATG
R:
TTCCCAGCTGTGCATTCATCC
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]