BtaEX6070409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68682930-68684823:+
Coord C1 exon
chr16:68682930-68683100
Coord A exon
chr16:68683492-68683662
Coord C2 exon
chr16:68684653-68684823
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTCTTTAACCCAGTTG
3' ss Score
6.39
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TTCATGGAGCATGGAGTACCTGGCAGCCTTGGGGGACATGCAGCGTAAGTTGTGGGAAAGGTACCCAAACAAGAGCAAGACTGTGCAATAACCCACCACCATCATTCGCTGGGTCCTACTGTGATGGAGCAGAAACACAGATTCAAGTTTGCAATGAAAGACACTGTCCAA
Seq A exon
TTGATGGCAAGTGGGCCACCTGGACCAGTTGGAGTGCCTGCTCTGTATCCTGTGGAGGTGGCGCCAGGCAGAGAACAAGGGACTGCTCTGATCCTGCTCCCCAGTATGGAGGCAACAAATGTGAAGGGAGTGATGTCCAGAGCGATTTTTGTAATAGTGACTCTTGTCCAA
Seq C2 exon
CTCATGGTAACTGGAGTCCTTGGAGTGGCTGGGGAATATGCAGCCGGACATGTAATGGGGGGCAGATGCGGCGGTACCGCACATGTGATAACCCTCGTCCCTCCAATGGAGGAAGAGCTTGTGGGGGCCCAGACTCCCAGATCCAGAGATGCAACACGGACATGTGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'95-103,'95-102,96-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGCAATAACCCACCACC
R:
ATGTCCGTGTTGCATCTCTGG
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]