GgaEX6045284 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:361170-362899:+
Coord C1 exon
chr8_random:361170-361340
Coord A exon
chr8_random:361888-362058
Coord C2 exon
chr8_random:362729-362899
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGCCTTTCTCACCAGTGG
3' ss Score
8.84
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TTGATGGTGAGTGGAGCTCCTGGCTTCCATGGGGCCCATGCAGCGAGAGCTGTGGGAAAGGCACCCAGACGCGGCTGCGGCTCTGCAGCAGCCCCTCTCCCTCACATGGCGGGTCCCACTGCCGCGGGCCTGATGTGCAGAGGCAGGTCTGCAGCAAGAGGCGCTGCCCAG
Seq A exon
TGGACGGGAAGTGGGCCCCATGGGGCAGCTGGAGCGCCTGCACTGTGTCCTGTGGGGGAGGCAGCAGTCAGAGGACACGCCAATGCTCAGACCCAGCCCCACAGTTTGGAGGTCACAGATGTGAAGGAAACAACATACAAGTTGATTTTTGCAACAGCGATCCTTGTCCCA
Seq C2 exon
TTCATGGCAGCTGGGGCCCTTGGGGCAGCTGGGGAACGTGCAGTCGTTCATGCAATGGTGGGCAGGTGAGGCGGTACCGGGGCTGTGACAGCCCTCGCCCCAGCAGCGGCGGCAGGGCCTGTGCAGGGGCTGACATGCAGATCCAGAGGTGTGGCACTGGCCTGTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'104-126,'104-125,105-126=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.034 C2=0.017
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGTGAGTGGAGCTCCT
R:
CCTCACCTGCCCACCATTG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]