GgaEX0007057 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:361888-366603:+
Coord C1 exon
chr8_random:361888-362058
Coord A exon
chr8_random:362729-362899
Coord C2 exon
chr8_random:366433-366603
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATGACATTTATTTTCACAGTTC
3' ss Score
7.64
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGGACGGGAAGTGGGCCCCATGGGGCAGCTGGAGCGCCTGCACTGTGTCCTGTGGGGGAGGCAGCAGTCAGAGGACACGCCAATGCTCAGACCCAGCCCCACAGTTTGGAGGTCACAGATGTGAAGGAAACAACATACAAGTTGATTTTTGCAACAGCGATCCTTGTCCCA
Seq A exon
TTCATGGCAGCTGGGGCCCTTGGGGCAGCTGGGGAACGTGCAGTCGTTCATGCAATGGTGGGCAGGTGAGGCGGTACCGGGGCTGTGACAGCCCTCGCCCCAGCAGCGGCGGCAGGGCCTGTGCAGGGGCTGACATGCAGATCCAGAGGTGTGGCACTGGCCTGTGCCCTG
Seq C2 exon
TGAATGGAAACTGGGGGCCATGGCAGACATGGAGCCAGTGCTCTGCTTCTTGTGGCGGAGGAGAGCAGACTCGAACACGCCTGTGCAGCAATCCTGCCCCGCTATATAATGGTCATCCTTGTCCTGGAGACTCTTCCCAAATATCCAGGTGTAATAGTCAAGCATGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'105-127,'105-126,106-127
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9),PF074747=G2F=PU(0.5=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGAGGACACGCCAATG
R:
TGGGAAGAGTCTCCAGGACAA
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]