RnoEX0042104 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67944287-67945414:-
Coord C1 exon
chr13:67945244-67945414
Coord A exon
chr13:67944607-67944777
Coord C2 exon
chr13:67944287-67944457
Length
171 bp
Sequences
Splice sites
3' ss Seq
CAAATTATTTCACTTCGTAGCCC
3' ss Score
5.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TGGATGGCAAGTGGGCAGCTTGGACCAGTTGGAGTACCTGCACTGTATCCTGTGGAGGAGGTACCAGGAAGAGAACAAGGGACTGTTCTGACCCAGTGCCACAGTATGGAGGAAACAAATGCGAAGGGACTGGTGTCCAGAGTGACTTTTGCAATAGTGACCCTTGTCCAA
Seq A exon
CCCATGGCAACTGGAGCCCTTGGAGTGGCTGGGGGATGTGCAGTCGGACATGCAATGGAGGGCAGATGAGACGGTACCGCACATGTGATAATCCACGGCCCTCCAATGGAGGAAGAGCCTGTGGGGGTCCAGATACCCAGATCCAGAGGTGTAATACTGACATGTGTCCTG
Seq C2 exon
TGGATGGAAGTTGGGGAACATGGCATAGTTGGAGTCATTGTTCTGTCTCTTGCGGGGGAGGTGAAAGAACTCGAAAGCGGTTATGTGACAATCCTGTGCCCTCTAAAAGTGGCCGTTCCTGTCCAGGAGATGCCACCCAAGTCTCCAGATGCAACATGCAGGCTTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'108-108,'108-107,110-108
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.069
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9),PF074747=G2F=PU(0.5=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGACTGTTCTGACCCA
R:
ATCTGGAGACTTGGGTGGCAT
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]