GgaEX0007056 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:359714-362058:+
Coord C1 exon
chr8_random:359714-359887
Coord A exon
chr8_random:361170-361340
Coord C2 exon
chr8_random:361888-362058
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTGCTGACTTTGCAGTTG
3' ss Score
6.8
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAGTGCGTGGTGGATTTTCGGATTGGCTTGAATGGCAACCTTGCAGCGTAACATGTGGTCAGGGTGTTCAGAAGCGCGCTCGTTGGTGCAACAACCCCCTTCCAGCAAATGGTGGGAGGCCATGTGAGGGGCCTGACACAGATGTGCGCAGCTGCCACAACAAGCCATGTCCAG
Seq A exon
TTGATGGTGAGTGGAGCTCCTGGCTTCCATGGGGCCCATGCAGCGAGAGCTGTGGGAAAGGCACCCAGACGCGGCTGCGGCTCTGCAGCAGCCCCTCTCCCTCACATGGCGGGTCCCACTGCCGCGGGCCTGATGTGCAGAGGCAGGTCTGCAGCAAGAGGCGCTGCCCAG
Seq C2 exon
TGGACGGGAAGTGGGCCCCATGGGGCAGCTGGAGCGCCTGCACTGTGTCCTGTGGGGGAGGCAGCAGTCAGAGGACACGCCAATGCTCAGACCCAGCCCCACAGTTTGGAGGTCACAGATGTGAAGGAAACAACATACAAGTTGATTTTTGCAACAGCGATCCTTGTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'101-125,'101-124,104-125
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.017 C2=0.034
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=86.4)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGATTGGCTTGAATGGCA
R:
CATTGGCGTGTCCTCTGACTG
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]