RnoEX0042103 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67945244-67950019:-
Coord C1 exon
chr13:67949849-67950019
Coord A exon
chr13:67945769-67945939
Coord C2 exon
chr13:67945244-67945414
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCTGGTGTTTGTAGTCC
3' ss Score
7.02
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGATGGTCACTGGTCAGAATGGAGCTTCTGGGAAGAATGCTCAAGAAGCTGTGGGCATGGCAACCAAACTAGGACGAGAACTTGCAGTAACCCACCGGCTCAGCATGGTGGGCGGCCATGTGAGGGGTATGCTGTGGAAACCATCATGTGTAACATTCGGCCTTGCCCAG
Seq A exon
TCCATGGTGTGTGGAATGCTTGGCAACCTTGGGGTTCGTGCAGCAAAAGCTGTGGAAAAGGCAGTCAGACAAGAACAAGACTTTGCAACAGCCCGCCACCGTCATTTGGTGGGGCCTACTGCAATGGAGCAGAAACCCAGATGCAAGTCTGCAATGAGAGACACTGTCCAG
Seq C2 exon
TGGATGGCAAGTGGGCAGCTTGGACCAGTTGGAGTACCTGCACTGTATCCTGTGGAGGAGGTACCAGGAAGAGAACAAGGGACTGTTCTGACCCAGTGCCACAGTATGGAGGAAACAAATGCGAAGGGACTGGTGTCCAGAGTGACTTTTGCAATAGTGACCCTTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'106-106,'106-105,107-106
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGCAACCAAACTAGGA
R:
GACACCAGTCCCTTCGCATTT
Band lengths:
254-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]