BtaEX6070467 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68487807-68491559:+
Coord C1 exon
chr16:68487807-68487934
Coord A exon
chr16:68490188-68490460
Coord C2 exon
chr16:68491464-68491559
Length
273 bp
Sequences
Splice sites
3' ss Seq
TACTCAGTCATTGTTTCCAGTGC
3' ss Score
4.35
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACACACGTTCCTCCCTTCTGGTTCAATGAAGATCACTGAGACCCGTGTTTCAGATAGTGGGATGTATCTTTGCGTCGCCACAAATATTGCAGGGAATGTGACCCAGTCTGTTAAATTAAACGTCCATG
Seq A exon
TGCCTCCAAAGATACAGCGTGGCCCTAAAGTTATGAAAGTCCAAGTTGGTCAAAGAGTGGACATTCCGTGCAGTGCTCAAGGGACACCTCTTCCTGTTATCACCTGGTTCAAAGGTGGAGGCGCCGTGCTGGTTGATGGACTGCAGCACATTAGGCATCCAGATGGGACATTAAGCATCAAACAAGCGGTGCTCTCAGATGCTGGCATATATACATGTGTCGCTACTAACATAGCAGGCAGTGATGAGACGGAGATAACACTACATGTTCAAG
Seq C2 exon
AACCACCTATTCTGGAAGACCTAGAGCCTCCATATAACACTCCATTCCAAGAGAGAGTGGCCAACCAACGCATTGCATTTCCATGTCCTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'26-34,'26-33,27-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.043 C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(47.7=93.2)
A:
PF0767911=I-set=WD(100=95.7)
C2:
PF0767911=I-set=PU(21.0=51.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTTCCTCCCTTCTGGTT
R:
TTTGCAGGACATGGAAATGCA
Band lengths:
220-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]