RnoEX6044605 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68101047-68103957:-
Coord C1 exon
chr13:68103830-68103957
Coord A exon
chr13:68102345-68102617
Coord C2 exon
chr13:68101047-68101142
Length
273 bp
Sequences
Splice sites
3' ss Seq
TGCTCAGTTGTGTTTTCTAGTTC
3' ss Score
6.58
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ACACACGTTCCTGCCTTCTGGCTCAATGAAGATCACAGAAACACGCATTTCAGACAGTGGGATGTATCTGTGTGTGGCCACAAATATTGCTGGGAATGTGACTCAATCCGTTAAATTAAGCGTCCATG
Seq A exon
TTCCTCCAAAAATACAGCATGGAAATAGACACCTAAAAGTCCAAGTCGGCCAGAGAGTGGACATCCCGTGCAATGCCCATGGGTCTCCTCCTCCCGTCATCACCTGGTTTAAAAGTGGAAGGCCCATGCCGTTCAATGGAGTGCAGCATCCTGGTAGCCCAGATGGAATGCTGACCATTGAGCAGACCACACTCTCAGATGCTGGCACATACACATGCACTGCCACAAACATAGCCGGAAGTGATGAAGCAGAGGTCACCTTGCATGTCCAAG
Seq C2 exon
AACCACCCACAGTGGAAGACCTGCAACCTCCCTTTAACACTCCGTTCCAAGAACGGTTGGCCAATCAGCGCATGGCATTTCCATGCCCTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.522 C2=0.606
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(47.7=93.2)
A:
PF0767911=I-set=WD(100=95.7)
C2:
PF0767911=I-set=PU(22.9=57.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGTTCCTGCCTTCTGG
R:
TTTTGCAGGGCATGGAAATGC
Band lengths:
222-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]