BtaEX6070738 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012020 | TRAF5
Description
Bos taurus TNF receptor-associated factor 5 (TRAF5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105340]
Coordinates
chr16:73905395-73906658:-
Coord C1 exon
chr16:73906494-73906658
Coord A exon
chr16:73905799-73905876
Coord C2 exon
chr16:73905395-73905469
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCACCCTTTCATTGCTTCAGAAT
3' ss Score
7.6
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACCACCTTCAGCACTGCCTGTTCCAGCCTGTGCAGTGTTCTAATGAAAACTGTCGGGAGCCAGTCCTTCGCAAAGATCTGAAAGAGCATCTGAGCGCATACTGCCAGTTTCGAGAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
Seq A exon
AATCACGAGGAAAACCTGTGTCCTGACTACCCAGTATCTTGTCCCAACAAGTGTTTGCAGACCATTCCAAGAACTGAG
Seq C2 exon
GTGGATGAACACCTGGCCGTGTGTCCTGAAGCTGAACAAGACTGTGCTTTTAAGAACTATGGCTGTGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012020-'8-5,'8-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(1.6=7.3)
A:
PF059116=DUF869=FE(10.1=100),PF0217613=zf-TRAF=PU(40.7=92.3)
C2:
PF059116=DUF869=FE(9.7=100),PF0217613=zf-TRAF=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCTGTGCAGTGTTCTA
R:
TGTTCAGCTTCAGGACACACG
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]