HsaEX0066840 @ hg38
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]
Coordinates
chr1:211359912-211365468:+
Coord C1 exon
chr1:211359912-211360076
Coord A exon
chr1:211360702-211360779
Coord C2 exon
chr1:211365376-211365468
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGCACTTTCTCTATTTCAGAAT
3' ss Score
11.03
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GATCACCTTCAGCAGTGCTTATTTCAACCTGTGCAGTGTTCTAATGAGAAGTGCCGGGAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCATCCTGTCAGTTTCGAAAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
Seq A exon
AATCATGAGGAAAACTTGTGTCCTGAATACCCAGTATTTTGTCCCAACAATTGTGCGAAGATTATTCTAAAAACTGAG
Seq C2 exon
GATAAACGGAGGAACCTGCAGCAACATGAGCATTCAGCCTTACGGGAGCACATGCGTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-6/11=5-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(8.0=38.2)
A:
PF059116=DUF869=FE(9.6=100),PF0217613=zf-TRAF=PU(40.7=92.3)
C2:
PF059116=DUF869=FE(11.5=100),PF0217613=zf-TRAF=PD(13.6=25.8),PF086146=ATG16=FE(40.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAGTCCTACGGAAAGA
R:
AAAACCAAACGCATGTGCTCC
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development