DreEX0080986 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38354704-38357884:+
Coord C1 exon
chr22:38354704-38354868
Coord A exon
chr22:38355692-38355769
Coord C2 exon
chr22:38357810-38357884
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTAAACTTCCTCCAACAGGGC
3' ss Score
8.66
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATCATCTAAAGGCTTGTCCGCATGAGCGAGTCCGCTGTTCACACTCCGACTGCAGTGACATTGTGTTACGCAAAAACCTGCTGGAGCATCAGAGGAACGCCTGCTCCTACCGGCTGGAAACCTGCCATTACTGCAGGCAGAACTTCCCTGTGTCTCAGATGATG
Seq A exon
GGCCATCAGAAGTCTTCATGCCCAGATGTGGAAGTCCCATGCTCCAACAACTGCACGCAGATGATTAAAAGACACCAG
Seq C2 exon
CTGCAAGCACATGCTGACGAGTGTCTCGAAGTGGAGACCGACTGCGTTTATAAAAACTACGGCTGCACAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(40.7=92.3)
C2:
PF0217613=zf-TRAF=FE(40.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCACACTCCGACTGCAG
R:
CAGTCGGTCTCCACTTCGAGA
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]