DreEX0080985 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38352808-38355769:+
Coord C1 exon
chr22:38352808-38352909
Coord A exon
chr22:38354704-38354868
Coord C2 exon
chr22:38355692-38355769
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATGACTTGTCTCTTCCTCAGGAT
3' ss Score
9.82
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATCTTCCAAGACAACTGCTGTAAAAGGGAACTGCTGAACTTGGAGGTTTTCTGCACCAACGCGCCAGAATGCACTCAGAGGTTTTCTTTATGTAACCTGCAG
Seq A exon
GATCATCTAAAGGCTTGTCCGCATGAGCGAGTCCGCTGTTCACACTCCGACTGCAGTGACATTGTGTTACGCAAAAACCTGCTGGAGCATCAGAGGAACGCCTGCTCCTACCGGCTGGAAACCTGCCATTACTGCAGGCAGAACTTCCCTGTGTCTCAGATGATG
Seq C2 exon
GGCCATCAGAAGTCTTCATGCCCAGATGTGGAAGTCCCATGCTCCAACAACTGCACGCAGATGATTAAAAGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217613=zf-TRAF=PU(40.7=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCAAGACAACTGCTGT
R:
GGTGTCTTTTAATCATCTGCGTGC
Band lengths:
178-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]