GgaEX0014592 @ galGal4
Exon Skipping
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21612005-21613383:-
Coord C1 exon
chr3:21613282-21613383
Coord A exon
chr3:21612397-21612561
Coord C2 exon
chr3:21612005-21612082
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTATGTGTTGCAGGAA
3' ss Score
9.99
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATTCAAAGACAACTGTTGTAAAAGAGAAGTTCTCAACTTGTACGTGTTCTGCAAAAACCTGCCTGACTGCAATTCAAAAATAATTCTGGGGCGGTATCAG
Seq A exon
GAACATCTTCAGCAGTGTTTGTTTGAAAGCGTGCAATGCACTAATGATGGATGTTGTGATCAAATCCTTCGGAAAGATTTGAAAGACCATTTGAGTCAGCACTGTAAATTTCGAGAGGAAATGTGTCAGTACTGTAATAAATATGTGGTGTTAATTAACATAAAG
Seq C2 exon
AATCATGAGGAAAACGACTGTCCTGATTATCCCATGCCTTGTCTCCAAAACTGTTCACAGATAATTCTGAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217613=zf-TRAF=PU(40.7=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGACAACTGTTGTAAAAGAGA
R:
TATCTGTGAACAGTTTTGGAGACA
Band lengths:
162-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]