GgaEX0014592 @ galGal3
Exon Skipping
Gene
ENSGALG00000009864 | Q805B1_CHICK
Description
NA
Coordinates
chr3:23421745-23423123:-
Coord C1 exon
chr3:23423022-23423123
Coord A exon
chr3:23422137-23422301
Coord C2 exon
chr3:23421745-23421822
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTATGTGTTGCAGGAA
3' ss Score
9.99
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATTCAAAGACAACTGTTGTAAAAGAGAAGTTCTCAACTTGTACGTGTTCTGCAAAAACCTGCCTGACTGCAATTCAAAAATAATTCTGGGGCGGTATCAG
Seq A exon
GAACATCTTCAGCAGTGTTTGTTTGAAAGCGTGCAATGCACTAATGATGGATGTTGTGATCAAATCCTTCGGAAAGATTTGAAAGACCATTTGAGTCAGCACTGTAAATTTCGAGAGGAAATGTGTCAGTACTGTAATAAATATGTGGTGTTAATTAACATAAAG
Seq C2 exon
AATCATGAGGAAAACGACTGTCCTGATTATCCCATGCCTTGTCTCCAAAACTGTTCACAGATAATTCTGAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'6-10,'6-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217613=zf-TRAF=PU(40.7=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGACAACTGTTGTAAAAGAGA
R:
TATCTGTGAACAGTTTTGGAGACA
Band lengths:
162-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]