BtaEX6070737 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012020 | TRAF5
Description
Bos taurus TNF receptor-associated factor 5 (TRAF5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105340]
Coordinates
chr16:73905799-73909346:-
Coord C1 exon
chr16:73909245-73909346
Coord A exon
chr16:73906494-73906658
Coord C2 exon
chr16:73905799-73905876
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCTGTGGTTGCCTGTTGCAGGAC
3' ss Score
8.93
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGTTTAAAGATAATTGCTGCAAAAGGGAAGTCCTCAATTTGTATGTGTTTTGCAAAAATGCTCCCAGATGTAATGCCAAGATTATTCTGGGACGATACCAG
Seq A exon
GACCACCTTCAGCACTGCCTGTTCCAGCCTGTGCAGTGTTCTAATGAAAACTGTCGGGAGCCAGTCCTTCGCAAAGATCTGAAAGAGCATCTGAGCGCATACTGCCAGTTTCGAGAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
Seq C2 exon
AATCACGAGGAAAACCTGTGTCCTGACTACCCAGTATCTTGTCCCAACAAGTGTTTGCAGACCATTCCAAGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012020-'7-4,'7-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059116=DUF869=PU(1.6=7.3)
C2:
PF059116=DUF869=FE(10.1=100),PF0217613=zf-TRAF=PU(40.7=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAAAGATAATTGCTGCAAAAGGG
R:
CTCAGTTCTTGGAATGGTCTGCA
Band lengths:
178-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]