RnoEX0093221 @ rn6
Exon Skipping
Gene
ENSRNOG00000047957 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr13:110770569-110775582:-
Coord C1 exon
chr13:110775481-110775582
Coord A exon
chr13:110771680-110771844
Coord C2 exon
chr13:110770569-110770646
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTGTCATTCATTGTCACAGGAC
3' ss Score
8.04
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTTTAAAGACAACTGCTGCAAAAGAGAAGTTCTCAACTTACACGTCTACTGCAAAAACGCACCTGGATGCAATGCCAGGATTATTCTGGGACGGTTCCAG
Seq A exon
GACCACCTTCAGCACTGCTCCTTCCAAGCTGTGCCCTGCCCCAACCAGAGCTGCCGGGAAGCCATGCTCCGGAAAGATGTGAAAGAGCATCTGAGTGCCTACTGCCGGTTCCGAGAGGAGAAGTGCCTTTACTGCAAGAGGGACATAGTGGTGACTAACCTGCAG
Seq C2 exon
GATCATGAGGAAAACTCGTGTCCTGCATATCCAGTGTCTTGTCCCAACAAGTGTGTGCAGACTATTCCGAGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047957-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(94.6=96.4)
C2:
PF0217613=zf-TRAF=PD(1.8=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTAAAGACAACTGCTGCA
R:
CCAGCTCTCGGAATAGTCTGC
Band lengths:
179-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]