HsaEX0066839 @ hg19
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211529709-211538810:+
Coord C1 exon
chr1:211529709-211529810
Coord A exon
chr1:211533254-211533418
Coord C2 exon
chr1:211538718-211538810
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGTTATCTGTTGCAGGAT
3' ss Score
10.66
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG
Seq A exon
GATCACCTTCAGCAGTGCTTATTTCAACCTGTGCAGTGTTCTAATGAGAAGTGCCGGGAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCATCCTGTCAGTTTCGAAAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
Seq C2 exon
GATAAACGGAGGAACCTGCAGCAACATGAGCATTCAGCCTTACGGGAGCACATGCGTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-5/11=4-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(4.5=26.5),PF086146=ATG16=PU(13.9=32.4)
A:
PF059116=DUF869=PU(8.0=38.2)
C2:
PF0217613=zf-TRAF=PD(13.6=25.8),PF059116=DUF869=FE(11.5=100),PF086146=ATG16=FE(40.5=100),PF100464=BLOC1_2=PU(18.4=58.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAAGACAATTGTTGCAAAAGAGA
R:
GGACATTCTTTTCTAAAACCAAACGC
Band lengths:
178-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)