MmuEX6030116 @ mm10
Exon Skipping
Gene
ENSMUSG00000026637 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr1:192057140-192059159:-
Coord C1 exon
chr1:192058995-192059159
Coord A exon
chr1:192057975-192058052
Coord C2 exon
chr1:192057140-192057214
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACCCACTTGTCTGTTTCAGGAT
3' ss Score
11.79
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GACCACCTTCAGCACTGTTCCTTCCAAGCCGTGCCCTGCCCTAACGAGAGCTGCCGGGAAGCCATGCTCCGGAAAGACGTGAAAGAGCACCTGAGCGCATACTGCCGGTTCCGAGAGGAGAAGTGCCTTTACTGCAAAAGGGACATAGTGGTGACCAACCTGCAG
Seq A exon
GATCATGAGGAAAACTCGTGTCCTGCGTACCCAGTGTCTTGTCCCAACAGGTGTGTGCAGACTATTCCAAGAGCTAGG
Seq C2 exon
GTGAATGAACACCTTACTGTATGTCCTGAGGCTGAGCAAGACTGTCCCTTTAAGCACTATGGCTGCACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026637-'18-15,'18-13,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.6=96.4)
A:
PF0217613=zf-TRAF=PD(1.8=3.8),PF0314511=Sina=PU(15.6=38.5)
C2:
PF0314511=Sina=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTCCGGAAAGACGTGAA
R:
GACAGTGCAGCCATAGTGCTT
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types