GgaEX6029336 @ galGal4
Exon Skipping
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21611560-21612561:-
Coord C1 exon
chr3:21612397-21612561
Coord A exon
chr3:21612005-21612082
Coord C2 exon
chr3:21611560-21611634
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTTTCCCCAGAAT
3' ss Score
11.12
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAACATCTTCAGCAGTGTTTGTTTGAAAGCGTGCAATGCACTAATGATGGATGTTGTGATCAAATCCTTCGGAAAGATTTGAAAGACCATTTGAGTCAGCACTGTAAATTTCGAGAGGAAATGTGTCAGTACTGTAATAAATATGTGGTGTTAATTAACATAAAG
Seq A exon
AATCATGAGGAAAACGACTGTCCTGATTATCCCATGCCTTGTCTCCAAAACTGTTCACAGATAATTCTGAAAAAGGAG
Seq C2 exon
ATTGAAAAGCATCATACTGTGTGTCCTGAGACTGAAGTGGACTGCCCATATAAACAGTATGGCTGTCTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'11-10,'11-8,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(40.7=92.3)
C2:
PF0217613=zf-TRAF=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAAAGCGTGCAATGCA
R:
CTTCAGTCTCAGGACACACAGT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]