BtaEX6070905 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78156981-78179379:+
Coord C1 exon
chr16:78156981-78157562
Coord A exon
chr16:78176214-78176409
Coord C2 exon
chr16:78179240-78179379
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTGCCGACTTTTGCATAAAGGTG
3' ss Score
4.04
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAAGAGTTGCCGTTGTTCAGACACAGCCGTTCACGGGGACAAAGACTGTGGGGAGGAGGAGGACCCCTGCCTCTCCAGCCCCTGTCCTGGACACGCCACGTGCGCCCGCGTCCCGGGGGAGAGGCGCTCTCGGTGCAGATGTCCTCCCGGGCACAGCGGGGCCGGCTGCGACACCGCCGCTGGCCCCTGCGGGCCCCGCTCCTGCCTGCACGGGGGCGTCTGCCACCAGGACCCCGGGCCCCCTGTGTGCGTCTGCCCCGCTGGCTATGCGGGAAGGTTCTGCGAGCTGGACCTCGACGAGTGCGCGTCCAGCCCCTGCCTGCACGGCGCCATGTGCCAGGACAGAGGCGACGGCTACTCCTGCTTCTGTGTCCCGGGCTATCAAGGCCGGCACTGCGACGTGGAAGTGGACGAGTGTGTGTCGGAGCCCTGCCGGAACGCGGCCACGTGCCTCAACGAGATCGGACGGTACACCTGCCTCTGCCCGCGCGGGTTCTCTG
Seq A exon
GTGTAAACTGTGAACTGGAAGTTGATGAGTGTTGGTCCCAGCCCTGCCTCAATGGTGCCACTTGCCGGGACGCTGCGGGGGCCTACTTCTGTGACTGTGCCCCGGGATTCCTGGGCGATCACTGTGAGCTCAACACGGACGAGTGTGCCAGTGGGCCGTGTCTCCATGGTGGGCTGTGCGTGGACGGAGCCAACAG
Seq C2 exon
GTACAGCTGTACCTGCGCAGGTAGTGGGTTCACGGGGACACGCTGTGAGACCCTGCTGCCCCCGTGTTGGTCAGAGCCCTGTCACAACAACGCCATCTGCGAGGACAGTGCTGACCGCTACACCTGCCGCTGCCGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=15.9),PF0000822=EGF=WD(100=15.9),PF0764510=EGF_CA=PU(84.2=16.4)
A:
PF0764510=EGF_CA=PD(13.2=7.6),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
C2:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCTGCTTCTGTGTCCCG
R:
AGATGGCGTTGTTGTGACAGG
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]