GgaEX1017521 @ galGal4
Exon Skipping
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2529699-2538304:-
Coord C1 exon
chr8:2537632-2538304
Coord A exon
chr8:2530962-2531157
Coord C2 exon
chr8:2529699-2529838
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTCGCCCTCTCCCCCGCAGGCG
3' ss Score
12.99
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
Exon sequences
Seq C1 exon
TATTTGCCGTTGTGTGGACATGTCACTTGACACTATGGAGGAACTCTGCAATAAAACCTCTGATCCTTGCTCCTCAAACCCTTGTCTTCAAAATGCTACCTGTTTAAGTTCTGCTGGAAACCTCAATTTCACTTGCGAGTGCCCAGATGGGTACAATGGGACCACTTGTGAAATAGCCATCAGTATGTGTGACACCAACCCCTGTGAACATGGAGGCACGTGCCTCGATGGCCTGGCCAGGCCCACCTGCCTCTGTCGCACAGGATTCACAGGTACACGCTGTGAAATGGATGTTGATGAGTGCAGCTCGGAACCATGCCACAATGGAGCAGTGTGCAGGGATGGGATTGATGAATACTCCTGCTACTGTGTCCCAGGCTACCAAGGCAAGCACTGCGACCTGGAGGTGAATGAATGTGTGTCAGACCCGTGCCTGAACGGGGCAACGTGTCTCAACCTTATAGGGAGGTATTACTGCATTTGTCCACTTGGGTACACAG
Seq A exon
GCGTCAACTGCGAGCTGGAGGTGGACGAATGCCAGTCGCGGCCGTGCCAGAACGGCGCCACCTGCCGCGACGCGCCGGCCGCCTTCTCCTGCTCCTGCCCGCCCGGCTTCCTCGGCGCCCTCTGCCAGACGGACGTGGACGAGTGCGCCAGCGGCCCCTGCCTGCACGGAGCGCTCTGCGCCGACCGGCCCGGGGG
Seq C2 exon
GTACAGCTGCAACTGCACTGGCACCGGGTTTATGGGCCTGCACTGCGAGAGCCTTGTACCCCCATGCTGGTCACAGCCGTGCTACAACAATGCCACATGTGAGGACAGTGCTGATGGATACACCTGTCACTGCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=17.2),PF0000822=EGF=WD(100=16.1),PF0000822=EGF=WD(100=16.1),PF0000822=EGF=PU(90.3=14.6)
A:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=45.5),PF0764510=EGF_CA=PU(56.8=31.8)
C2:
PF0764510=EGF_CA=PD(40.5=31.2),PF0000822=EGF=PU(81.8=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTGTCCCAGGCTACCA
R:
TCCATCAGCACTGTCCTCACA
Band lengths:
255-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]