MmuEX6027864 @ mm9
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:141219804-141234185:-
Coord C1 exon
chr1:141233607-141234185
Coord A exon
chr1:141224728-141224923
Coord C2 exon
chr1:141219804-141219943
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGCTTTTCTCATAGGCG
3' ss Score
8.51
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGACAACAATTGTTGCTTAGACACAGCCAATAATTTGGACAAAGACTGTGAAGATCTGAAAGACCCTTGCTTCTCGAGTCCCTGCCAAGGAATTGCCACTTGTGTGAAAATCCCAGGGGAAGGGAACTTCCTGTGTCAGTGTCCTCCTGGGTACAGCGGGCTGAACTGTGAAACTGCCACCAATTCCTGTGGAGGGAACCTCTGCCAACATGGAGGCACCTGCCGTAAAGACCCTGAGCACCCTGTCTGTATCTGCCCTCCTGGATATGCTGGAAGGTTCTGTGAGACTGATCACAATGAGTGTGCTTCTAGCCCTTGCCACAATGGGGCTATGTGCCAGGATGGAATCAATGGCTACTCCTGCTTCTGTGTGCCTGGATACCAAGGCAGGCATTGTGACTTGGAAGTGGATGAATGTGTTTCTGATCCCTGCAAGAATGAGGCTGTGTGCCTCAATGAGATAGGAAGATACACTTGTGTCTGCCCTCAAGAGTTTTCTG
Seq A exon
GCGTGAACTGTGAGTTGGAAATTGATGAATGCAGATCCCAGCCTTGTCTCCACGGTGCCACATGTCAGGACGCTCCAGGGGGCTACTCCTGTGACTGTGCACCTGGATTCCTTGGAGAGCACTGTGAACTCAGCGTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGTGTGGATGGAAGAAACAG
Seq C2 exon
TTACCACTGTGACTGCACAGGTAGTGGATTCACAGGGATGCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAACGACGCGACATGTGAAGATACTGTTGACAGCTATATTTGTCACTGCCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-'1-4,'1-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=17.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=PU(90.3=14.4)
A:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(54.8=25.8)
C2:
PF0000822=EGF=PD(41.9=27.1),PF0000822=EGF=PU(78.1=52.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTAGCCCTTGCCACAAT
R:
CAAGGACTCACAGTGCATCCC
Band lengths:
251-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: