RnoEX6044462 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56408146-56429400:-
Coord C1 exon
chr13:56428822-56429400
Coord A exon
chr13:56413441-56413636
Coord C2 exon
chr13:56408146-56408285
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGCTTTCCTCAAAGGCG
3' ss Score
6.54
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGACAGCAGTTGTTGCTTAGACACAGCCAATGATTTGGACACAGACTGTGAAGATCTGAAAGACCCCTGCTTGTCCAGTCCCTGCCAAGGAACCGCCACTTGTGTGAATATCCCAGGGGAAAGGAGCTTCCTGTGCCAATGTCCTCCCGGGTACAGTGGGCTAACCTGTGACACTGCCACCAATTCCTGTGGAGGGAATTTGTGCCAACATGGAGGCACCTGCCATAAAGACCCTGAGCATCCTGTCTGTATCTGCCCTCCTGGGTATGCTGGAAGGTTCTGTGAGACAGATCACAATGAGTGTGATTCTAGCCCTTGCCACAATGGGGCTGTGTGCCAAGACAGAATCAACGGCTACTCCTGCTTCTGTGTGCCTGGATACCAAGGCAGGCATTGTGACTTGGAAGTGGATGAATGTGTTTCTGATCCCTGCATGAATGAGGCTGTGTGCCTCAACGAGATAGGAAGGTACACTTGTGTCTGTCCTCAAGAGTACTCTG
Seq A exon
GCGTGAACTGCGAGTTGGAGATTGATGAATGCGGATCCCAGCCATGTCTACATGGTGCCACGTGTCGGGACGCCCTTGGGGGCTACTTCTGCGACTGTGCACCTGGATTCCTTGGAGACCACTGTGAACTCAACTTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGCGTAGATGGAAGAAACAG
Seq C2 exon
TTACCACTGTGACTGCACGGGTAGTGGATTCAGAGGGATCCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAATGATGCGACATGTGAAGACACTGTTGACAGCTATATTTGTCACTGCTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903-'1-4,'1-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=17.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=WD(100=16.0),PF0764510=EGF_CA=PU(82.1=16.5)
A:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
C2:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
Main Skipping Isoform:
ENSRNOT00000032122fB3569
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGCTACTCCTGCTTCTG
R:
TCGCATCATTGTGACAAGGCT
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]