MmuEX6027864 @ mm10
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:139323227-139337608:-
Coord C1 exon
chr1:139337030-139337608
Coord A exon
chr1:139328151-139328346
Coord C2 exon
chr1:139323227-139323366
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGCTTTTCTCATAGGCG
3' ss Score
8.51
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGACAACAATTGTTGCTTAGACACAGCCAATAATTTGGACAAAGACTGTGAAGATCTGAAAGACCCTTGCTTCTCGAGTCCCTGCCAAGGAATTGCCACTTGTGTGAAAATCCCAGGGGAAGGGAACTTCCTGTGTCAGTGTCCTCCTGGGTACAGCGGGCTGAACTGTGAAACTGCCACCAATTCCTGTGGAGGGAACCTCTGCCAACATGGAGGCACCTGCCGTAAAGACCCTGAGCACCCTGTCTGTATCTGCCCTCCTGGATATGCTGGAAGGTTCTGTGAGACTGATCACAATGAGTGTGCTTCTAGCCCTTGCCACAATGGGGCTATGTGCCAGGATGGAATCAATGGCTACTCCTGCTTCTGTGTGCCTGGATACCAAGGCAGGCATTGTGACTTGGAAGTGGATGAATGTGTTTCTGATCCCTGCAAGAATGAGGCTGTGTGCCTCAATGAGATAGGAAGATACACTTGTGTCTGCCCTCAAGAGTTTTCTG
Seq A exon
GCGTGAACTGTGAGTTGGAAATTGATGAATGCAGATCCCAGCCTTGTCTCCACGGTGCCACATGTCAGGACGCTCCAGGGGGCTACTCCTGTGACTGTGCACCTGGATTCCTTGGAGAGCACTGTGAACTCAGCGTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGTGTGGATGGAAGAAACAG
Seq C2 exon
TTACCACTGTGACTGCACAGGTAGTGGATTCACAGGGATGCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAACGACGCGACATGTGAAGATACTGTTGACAGCTATATTTGTCACTGCCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-'2-4,'2-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=17.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=PU(90.3=14.4)
A:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(54.8=25.8)
C2:
PF0000822=EGF=PD(41.9=27.1),PF0000822=EGF=PU(80.6=52.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTAGCCCTTGCCACAAT
R:
CAAGGACTCACAGTGCATCCC
Band lengths:
251-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types