BtaEX6070910 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012433 | DENND1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N0M9]
Coordinates
chr16:78405806-78437505:-
Coord C1 exon
chr16:78437449-78437505
Coord A exon
chr16:78436496-78436603
Coord C2 exon
chr16:78405806-78405882
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCGTATCCCTTCGGGTGCAGGAA
3' ss Score
7.86
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCAAGAATCACGCAAAGCAGGGGATAAAGGAGGTGAAGAGCAAGCTTAGACACAAG
Seq A exon
GAAAATGAGGACGACTATGGGACTTGTTCCAGTTCCGTGCAATACACGCCCGTTTACACGTTACACAGCGAGAGGGGAGCAAACCTAGCCAGGCGTAAGCTTTCCCAG
Seq C2 exon
TCACGACTCAGGCCTCTGAAGAGCCTGGACGGAGCCCTAGATGCTGACGATGAGGAGGACGCCGAGAGAGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012433-'6-13,'6-6,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.278 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAATCACGCAAAGCAG
R:
CTGGCTCTCTCGGCGTCC
Band lengths:
131-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]