GgaEX6043483 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2462411-2477487:+
Coord C1 exon
chr8:2462411-2462467
Coord A exon
chr8:2463269-2463379
Coord C2 exon
chr8:2477408-2477487
Length
111 bp
Sequences
Splice sites
3' ss Seq
GAATCTGTTTTGTTGCATAGGAG
3' ss Score
5.83
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCAAAAAACCACGCAAGGCAAGGAATAAAAGAAGTGAGGAGTAAGTTGAAACATAAG
Seq A exon
GAGAATGAGGAAGATTGTCAAACTTGCGGTGCTGTTGCAGTGCAGAGTGCTCCGGTCTACCCGGTGCCTAGTGAGAAAAGAGGGAACTCAGAAAAGCGAAAACTTGCACAG
Seq C2 exon
ACACGTTTCAACCAGCACCTCAATAACCAGGATTTTACCTTGGATGAAGATGATGATGATGAAATAGAGAGAACAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.622 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCACGCAAGGCAAGGAAT
R:
TGCTTGTTCTCTCTATTTCATCATCA
Band lengths:
131-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]