RnoEX6044454 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56215314-56234234:+
Coord C1 exon
chr13:56215314-56215370
Coord A exon
chr13:56216191-56216298
Coord C2 exon
chr13:56234158-56234234
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTACTGTTCCTCATGTGTAGGAC
3' ss Score
8.88
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAAAGAGTCACGCCAGACTGGGTCTGAAGGAGGTGAAGAGCAGACTGAGACACAAG
Seq A exon
GACAATGAGGAGGATTATGGGACCTGTTCTGGTTTGGTACAGTACACACCAGTATACACCTTGCACCATGAAAGGGGAGAAACCAGAGAGAAGCAGAAGCTTTCCCAG
Seq C2 exon
GCACACTTGAAAAGGCCCCATAAGAGCCTCGACGGCACCCTGTATGATGATGATGATGACATCGAAAGGGCAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063-'42-42,'42-39,44-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.472 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGTCACGCCAGAC
R:
TTGCTTGCCCTTTCGATGTCA
Band lengths:
134-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]