MmuEX6027858 @ mm10
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139142834-139167756:+
Coord C1 exon
chr1:139142834-139142890
Coord A exon
chr1:139143893-139144000
Coord C2 exon
chr1:139167671-139167756
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTCTTCATGTATAGGAC
3' ss Score
8.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAAAGAGTCACGCCAGACTGGGACTAAAGGAGGTGAAGAGCAGGCTGAAACACAAG
Seq A exon
GACAATGAGGAAGAGTATGGGACCTGTTCTGGTTTGGTGCAGTATACACCAGTGTACACTTTACACAATGAAAAGGGAGAGAACAGAGAGAAGCACAAGCTTTCCCAG
Seq C2 exon
ACACACTTGAAAAGGCCTCATAAGAGCCTAGATGGTACCCTGTATGATGATGATGATGATGACGATGACATTGAACGGGCAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268-'41-49,'41-43,50-49=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.500 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGTCACGCCAGAC
R:
TTGCCCGTTCAATGTCATCGT
Band lengths:
139-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types