HsaEX6035791 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197482001-197510145:-
Coord C1 exon
chr1:197510089-197510145
Coord A exon
chr1:197509094-197509201
Coord C2 exon
chr1:197482001-197482083
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTTTCATGTGTAGGAA
3' ss Score
8.67
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCAAAAAATCATGCAAAGCTGGGACTAAAGGAAGTGAAGAGTAAACTAAAACACAAG
Seq A exon
GAAAATGAAGAAGATTATGGGACCTGTTCTAGTTCTGTACAATATACACCAGTTTACAAATTACACAATGAAAAGGGAGGAAACTCAGAAAAGCGTAAGCTTGCTCAG
Seq C2 exon
GCACGCTTAAAAAGGCCTCTTAAGAGCCTTGATGGTGCTCTATATGATGATGAAGATGATGATGACATTGAAAGAGCAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-'34-35,'34-33,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.562 C2=0.607
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAAAGCTGGGACTAAAGGA
R:
TGCTTGCTCTTTCAATGTCATCA
Band lengths:
130-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)