BtaEX6070983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81312736-81317403:+
Coord C1 exon
chr16:81312736-81312829
Coord A exon
chr16:81314458-81314542
Coord C2 exon
chr16:81317318-81317403
Length
85 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTGTCTTTCCTGTAGCTG
3' ss Score
8.69
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGTAACTACCTGGTGTTCATGGCCGAGCTCTTCTGGTGGTTCGAGGTCGTGAAGCCCTCCTTCGTCCAGCCCCGTGTCGCTCACCCACAAGGAG
Seq A exon
CTGAGCCTGTGGAGGATCTGCCATCACTTCCTGTCTCGAATGCTGCCCCCCAAGATGCCCTGGACAGCTCTGACCTCACGCCAGG
Seq C2 exon
CAGTGGGGAAGGAGCTGCGTTCACACACTCTCGTCCCCATTTGCCTTCCAGGCACTTACAGCCCCAGCCTCATCCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-'12-15,'12-13,14-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.828 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCATGGCCGAGCTCTTC
R:
TGAGGCTGAAGGATGAGGCTG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]