MmuEX6027785 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138180444-138184570:-
Coord C1 exon
chr1:138184477-138184570
Coord A exon
chr1:138182486-138182579
Coord C2 exon
chr1:138180444-138180478
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGTTTCATCTTTTATTTTAGCTG
3' ss Score
7.57
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGTAATTATTTGGTGTTCATGGCAGAACTCTTCTGGTGGTTTGAAGTTGTGAAGCCTTCATTTGTGCAGCCTCGTGTTGTCCGTCCACAAGGAG
Seq A exon
CTGAGCCTGCAAAAGACGTGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACATCCGGGATAGTTCATCTAGTTCTGACTTCTCCTCCAG
Seq C2 exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'10-16,'10-13,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.263 C2=1.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(8.5=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAATTATTTGGTGTTCATGGCAGA
R:
GAGGCTGAAGAATGAGTCTGCG
Band lengths:
127-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: